Others titles

  • Human PBMC Isolate Data
  • Human Isolate Data Ficoll Separation
  • Human Isolate Data Centrifuged Blood
  • Peripheral Mononuclear Human Isolate Data

Keywords

  • Human PBMC
  • Ficoll Separation
  • Centrifuged Blood
  • Peripheral Mononuclear
  • Human Antibiotics
  • Antibacterial Resistance
  • Antimicrobial Medicines
  • Anti Microbial Drugs
  • Human Isolates
  • Antimicrobial Resistance

NARMS Human Isolate Data

The National Antimicrobial Resistance Monitoring System (NARMS) Human Isolate Data makes it easier and quicker to find out how antibiotic resistance has changed over the past 20 years for four bacteria transmitted commonly through food—Campylobacter, E. coli O157, Salmonella, and Shigella.

Log in to download
Complexity

Get The Data

For getting access to data download links please read and accept the end-user license agreement.
Your Data License
  • Research
    Non-Commercial, Share-Alike, Attribution Free Forever
  • Commercial
    Commercial Use, Remix & Adapt, White Label Log in to download

John Snow Labs Standard End User License Agreement

Last updated:January 20, 2021

This Standard End User License Agreement (“EULA”) applies to customers of John Snow Labs Inc. (as defined below), using any product of John Snow Labs Inc. on John Snow Labs Marketplace as defined below (hereinafter referred to “you”) and John Snow Labs Inc., a Delaware corporation (“John Snow Labs”, “we” or “us”).

By downloading, installing, and/or using (as applicable) any Product of John Snow Labs (as defined below), you automatically agree to be bound by, and use our Products in compliance with, this EULA. This EULA, together with additional terms and conditions and/or policies referenced herein or located on https://www.johnsnowlabs.com and/or conveyed to you by John Snow Labs, is a legally binding contract between you and John Snow Labs.

PLEASE READ THIS EULA CAREFULLY BEFORE PURCHASING, INSTALLING OR USING OUR PRODUCTS MADE AVAILABLE ON JOHN SNOW LABS MARKETPLACE.

We may make changes to this EULA from time to time. When we do so, we will revise the “last updated” date given above. The then-current version of this EULA will supersede all earlier versions. You agree that your continued use of our Products after such changes have been published to our EULA will constitute your acceptance of such revised EULA.

Definitions

“John Snow Labs Data Library” means a data library located at https://www.johnsnowlabs.com;

“Products” means products and services of John Snow Labs that you download and use from listings in John Snow Labs Data Library;

Important Notice

By installing and using our Products, you acknowledge that the use of the Products can be subject to the restrictions and controls imposed by United States export regulations.

You represent and warrant that you do not intend to use the Products for any purpose prohibited by United States export regulations, including, without limitation, terrorism, cyber-attacks, cyber-crimes, money-laundering, industrial espionage, or nuclear, chemical or biological weapons proliferation. Further, you represent and warrant that you are not listed as a denied party on any list governing United States exports.

Eligibility

Our Products can be used by an individual, business or other legal entity, or both. If you are entering into this EULA, or using the Products, on behalf of a company or other legal entity, you represent that you have the authority to bind such entity to this EULA, in which case “you” shall refer to such entity.

In the event you have entered into a separate written agreement with John Snow Labs regarding the Products that contemplates terms that are inconsistent with this EULA, the written agreement shall control and this EULA will not apply to you to the extent inconsistent with such written agreement, or, if such written agreement is contemplated to be in lieu of this EULA, then this EULA shall not apply at all.

Your Access and Use

Subject to your compliance with this EULA, as well as any other applicable policies, John Snow Labs grants you non-exclusive, non-transferable, license to install, access to, modify, and use of, the Products worldwide (subject to applicable export laws) during the term of this EULA (as described below) solely for research, private study and personal use of Products.

This license is personal to you, and you may not resell our Products, permit other users access to our Products through your account. Your right to use our Products is limited by all terms and conditions set forth in this EULA.

Except for your pre-existing rights and this license granted to you, we and our licensors retain all rights, titles and interests in and to our Products, all related intellectual property rights, including trademarks (whether registered or pending), domain and business names. Our Products are protected by applicable intellectual property laws, including United States copyright law and international treaties.

Except for the foregoing license, you have no other rights in the Products and you may not modify, edit, copy, reproduce, create derivative works of, reverse engineer, alter, enhance or in any way exploit the Products in any manner. If you breach any of this EULA, the above license will terminate automatically.

You will be deemed to have taken any action that you permit, assist or facilitate any person or entity to take related to this EULA, your content or use of the Products. You are responsible for end users’ use of your content and the Products. You will ensure that all end users comply with your obligations under this EULA and that the terms of your agreement with each end user are consistent with this EULA. If you become aware of any violation of your obligations under this EULA caused by an end user, you will immediately suspend access to your content and the Products by such end user. We do not provide any support or services to end users unless we have a separate agreement with you or an end user obligating us to provide such support or services.

Restrictions

You will access or use our Products solely via John Snow Labs Data Library.

Except as otherwise explicitly provided in this EULA or as may be expressly permitted by applicable law, you will not, and will not permit or authorize any third party to:

  1. reproduce, modify, translate, enhance, decompile, disassemble, reverse engineer or create derivative works of any of our Products or its technological features or measures;
  2. rent, lease, sell, resell, loan, distribute, or sublicense access to any of our Products;
  3. circumvent or disable any security or technological features or measures of our Products;
  4. use our intellectual property rights without our express prior written authorization;
  5. use our Products for more than one trial period, unless the trial period is extended by John Snow Labs’ prior written permit;
  6. use our Products with an intent to build a competitive product or service, or copy or substantially copy any ideas, features, functions, organization, structure, application program interface, graphics, or user interface of the Products;
  7. store, copy, modify, distribute, or resell any of the information; audio, visual, and audiovisual works, or other content made available on our Products (collectively, “Content”) or compile or collect any Content as part of a database or other work;
  8. use any automated tool (e.g., robots, spiders) to access or use our Products, or to store, copy, modify, distribute, or resell any Content;
  9. circumvent or disable any rights management, usage rules, or other security features of our Products;
  10. use our Products in a manner that overburdens, or that threatens the integrity, performance, or availability of, our Products; or
  11. remove, alter, or obscure any proprietary notices (including copyright and trademark notices) on any portion of our Products or any Content.

Fees and Taxes

Your use of the Products is subject to our fees. All fees are given on our website https://www.johnsnowlabs.com. Except as set forth in this EULA, the fees are non-refundable. We are entitled to revise our fees from time to time.

The fees exclude any federal, state or local taxes, VAT, GST, or similar taxes. You are responsible for identification and payment of all taxes as required by applicable law.

Term and Termination

This EULA will become effective as of the date of your order of Products and shall be in effect until terminated.

John Snow Labs may suspend or terminate your right to use our Products, if you or your end user’s use of the Products:

  1. is in breach of this EULA;
  2. poses a security risk to our Products;
  3. could adversely impact our systems, the Products or other customers;
  4. could subject us, our affiliates, or any third party to liability; or
  5. could be fraudulent.

We may also suspend or terminate your right to use our Products, if you fail to perform your payment obligations, or you have ceased to operate in the ordinary course, made an assignment for the benefit of creditors or similar disposition of your assets, or become the subject of any bankruptcy, reorganization, liquidation, dissolution or similar proceeding.

We may also suspend or terminate your right to use our Products without any reason upon a relevant 30 days’ written notice to you and will refund the unused fees pre-paid by you for access to the Products for the affected time period (if any). Where your access is suspended or terminated by the breach of this EULA or applicable laws, John Snow Labs will will not provide, or be liable for, any refund.

You will cease use of the Products during any period of suspension, or upon termination of this EULA.

All provisions which by their nature are intended to survive termination shall survive termination of this EULA.

Support

If applicable to your Product, John Snow Labs will provide you with the support services. If you use a trial access, support services are excluded. Under this EULA, our support services exclude any installation, training, maintenance services (including any error corrections, bug fixes, or new releases), technical assistance, consulting services, or other services of any kind. Such services are provided at John Snow Labs’ discretion.

From time to time John Snow Labs can perform updates to our software. If available, such updates may include bug fixes, new features and/or enhancements. You are solely responsible for deploying such updates at your own risk and liability.

Access to our Products

We do not provide you with the equipment to access our Products. You are responsible for all fees charged by third parties related to your access and use of our Products (e.g., charges by Internet service providers).

You are responsible for monitoring your use of the Products, including payment of all fees and/or taxes related to such access and use. You agree that John Snow Labs is permitted to request and you hereby consent to provide John Snow Labs information related to your use of the Products for auditing purposes.

You also certify that you are legally permitted to use the Products, and take full responsibility for the selection and use of the Products. This EULA is void where prohibited by law, and the right to use the Products is revoked in such jurisdictions. John Snow Labs makes no claim that the Products may be lawfully used outside of the United States. If you use the Products from outside of the United States, you do so at your own risk and you are responsible for compliance with the laws of jurisdiction.

Privacy Policy

We may collect, store and receive personal and other information about you through our Products. Our collection and use of this information is governed by our Privacy Policy available at https://www.JohnSnowLabs.com/privacy/ which may be amended from time to time.

Links and Third Party Content

Our Products may display, or contain links to, third party products, services, and websites. Any opinions, advice, statements, services, offers, or other information that constitutes part of the content expressed, authored, or made available by other users or other third parties, or which is accessible through or may be located using our Products (collectively, “Third Party Content”) are those of the respective authors or producers and not of us or our shareholders, directors, officers, employees, agents, or representatives.

We do not control Third Party Content and do not guarantee the accuracy, integrity or quality of such Third Party Content. We are not responsible for the performance of, we do not endorse, and we are not responsible or liable for, any Third Party Content or any information or materials advertised in any Third Party Content. By using our Products, you may be exposed to content that is offensive, indecent, or objectionable. We are not responsible or liable, directly or indirectly, for any damage or loss caused to you by your use of or reliance on any goods, services, or information available on or through any third party service or Third Party Content. It is your responsibility to evaluate the information, opinion, advice, or other content available on and through our Products.

Proprietary Rights

John Snow Labs will not obtain any rights under this EULA from you (or your licensors) to your content.

The Products, including software, is and remains the exclusive property of John Snow Labs and its licensors. Except for the access and use rights expressly set forth in this EULA, no license or other rights in or to the Products or John Snow Labs trademark(s) and other intellectual property rights therein, are granted to you, and all such licenses and rights are expressly reserved. You will not remove, alter, or obscure any proprietary notices (including copyright and trademark notices) on any portion of our Products or any Content.

Trademarks

“John Snow Labs,” the John Snow Labs logo, and any other product, business or service name or slogan, whether registered or pending, displayed on our Products are trademarks of John Snow Labs, Inc. or its suppliers or licensors, and may not be copied, imitated or used, in whole or in part, without the prior written permission of John Snow Labs or the applicable trademark holder. You may not use any metatags or any other “hidden text” utilizing “John Snow Labs” or any other name, trademark or product, business or service name of John Snow Labs without our prior written permission. In addition, the look and feel of our Products, including all page headers, custom graphics, button icons and scripts, is the service mark, trademark and/or trade dress of John Snow Labs and may not be copied, imitated or used, in whole or in part, without our prior written permission. All other trademarks, pending trademarks, registered trademarks, product names and company names or logos mentioned in our Products are the property of John Snow Labs Inc. and/or their respective owners. Reference to any products, services, processes or other information, by trade name, trademark, manufacturer, supplier, or otherwise does not constitute or imply endorsement, sponsorship, or recommendation thereof by us.

Disclaimer of Warranties

YOUR USE OF THE PRODUCTS IS AT YOUR SOLE RISK. THE PRODUCTS AND CONTENT EACH ARE PROVIDED ON AN “AS IS” AND “AS AVAILABLE” BASIS. WE AND OUR SUPPLIERS AND LICENSORS EXPRESSLY DISCLAIM ALL WARRANTIES OF ANY KIND, WHETHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE, AND NON-INFRINGEMENT. WE DO NOT GUARANTEE THE ACCURACY, COMPLETENESS, OR USEFULNESS OF THE PRODUCTS OR ANY CONTENT, AND YOU RELY ON THE PRODUCTS AND CONTENT AT YOUR OWN RISK. ANY MATERIAL THAT YOU ACCESS OR OBTAIN THROUGH OUR PRODUCTS IS DONE AT YOUR OWN DISCRETION AND RISK AND YOU WILL BE SOLELY RESPONSIBLE FOR ANY DAMAGE TO YOUR COMPUTER OR LOSS OF DATA THAT RESULTS FROM THE DOWNLOAD OF ANY MATERIAL THROUGH OUR PRODUCTS. NO ADVICE OR INFORMATION, WHETHER ORAL OR WRITTEN, OBTAINED BY YOU FROM US OR THROUGH OR FROM OUR PRODUCTS WILL CREATE ANY WARRANTY NOT EXPRESSLY STATED IN THIS EULA. SOME STATES MAY PROHIBIT A DISCLAIMER OF WARRANTIES AND YOU MAY HAVE OTHER RIGHTS THAT VARY FROM STATE TO STATE.

Limitation of Liability

WE AND OUR SUPPLIERS AND LICENSORS WILL NOT BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, CONSEQUENTIAL, OR EXEMPLARY DAMAGES, INCLUDING BUT NOT LIMITED TO, DAMAGES FOR LOSS OF PROFITS, GOODWILL, USE, DATA, OR OTHER INTANGIBLE LOSSES (EVEN IF WE HAVE BEEN ADVISED OF THE POSSIBILITY OF THESE DAMAGES), RESULTING FROM YOUR USE OF OUR PRODUCTS AND CONTENT. UNDER NO CIRCUMSTANCES WILL THE TOTAL LIABILITY OF US AND OUR SUPPLIERS AND LICENSORS OF ALL KINDS ARISING OUT OF OR RELATED TO YOUR USE OF THE PRODUCTS AND CONTENT (INCLUDING BUT NOT LIMITED TO WARRANTY CLAIMS), REGARDLESS OF THE FORUM AND REGARDLESS OF WHETHER ANY ACTION OR CLAIM IS BASED ON CONTRACT, TORT, OR OTHERWISE, EXCEED THE AMOUNTS, IF ANY, THAT YOU HAVE PAID FOR YOUR USE OF THE PRODUCTS AND CONTENT. BECAUSE SOME STATES DO NOT ALLOW THE EXCLUSION OR LIMITATION OF LIABILITY FOR CONSEQUENTIAL OR INCIDENTAL DAMAGES, THE ABOVE LIMITATION MAY NOT APPLY TO YOU.

Indemnity

To the full extent permitted by applicable law, you shall defend, indemnify and hold harmless John Snow Labs, its affiliates and its licensors, and each of their respective employees, officers, directors, and representatives from and against any claims, damages, losses, liabilities, costs, and expenses (including reasonable attorney’s fees) arising out of or relating to any third party claim concerning: (a) your use of the Products; (b) breach of this EULA or violation of applicable law by you; (c) any content or the combination of such content with other software, content or processes, including any claim involving alleged infringement or misappropriation of third-party rights by such content or combination; or (d) breach of any obligation or duty you owe to a third party.

Legal Notices

Enforcement of this EULA will be governed by the laws of the State of Delaware, excluding its conflict and choice of law principles. The exclusive jurisdiction and venue for any claims arising out of or related to this EULA or your use of the Products will lie in the state and federal courts located in Sussex County, within the State of Delaware, and you irrevocably agree to submit to the jurisdiction of such courts. Our failure to enforce any right or provision in this EULA will not constitute a waiver of such right or provision unless acknowledged and agreed by us in writing. In the event that a court of competent jurisdiction finds any provision of this EULA to be illegal, invalid, or unenforceable, the remaining provisions will remain in full force and effect.

Notifications

We may use your contact information to notify you if we have any legitimate interest or if we need to notify you on any important information related to your use of Products. We will not send you newsletters unless you expressly consented to such notifications.

Contacting Us

If you have any questions or concerns about our Products or this EULA, you may contact us by email at support@JohnSnowLabs.com.

Description

The National Antimicrobial Resistance Monitoring System for Enteric Bacteria (NARMS) was established in 1996. NARMS is a collaboration between state and local public health departments, CDC (Centers of Disease Control and Prevention), the U.S. Food and Drug Administration (FDA), and the U.S. Department of Agriculture (USDA). This national public health surveillance system tracks changes in the antimicrobial susceptibility of certain enteric (intestinal) bacteria found in ill people (CDC), retail meats (FDA), and food animals (USDA) in the United States. The NARMS program at CDC helps protect public health by providing information about emerging bacterial resistance, the ways in which resistance is spread, and how resistant infections differ from susceptible infections.

NARMS monitors antibiotic resistance among the following four major foodborne bacteria.

Salmonella:
Non-typhoidal Salmonella enterica is widely dispersed in nature. It can be found in intestinal tracts of vertebrates including wildlife, livestock, domestic pets, and also in environmental sources such as pond water. It is spread through the fecal oral route and through contact with contaminated foods. An estimated 1.2 million people get sick from Salmonella infection in the United States each year. Of these, about 23,000 are hospitalized, and 450 die from their infections. Symptoms include nausea, vomiting, abdominal cramps, diarrhea, fever, headache generally lasting 4 to 7 days with acute symptoms lasting 1-2 days. Serious disease can develop in the very young, the elderly and the immunocompromised. Fluoroquinolones and cephalosporins are used as first-line therapies for the treatment of serious Salmonella infection in adults. Cephalosporins are recommended for the treatment of pediatric infections.

Campylobacter:
Campylobacter is part of the natural gut flora of most food-producing animals such as chickens, turkeys, swine, cattle and sheep. It is estimated to cause over 1.3 million illnesses and 76 deaths in the United States each year. More than 80% of Campylobacter infections are caused by C. jejuni. However, other Campylobacter species, such as C. coli and C. fetus can cause disease in humans. C. coli and C. jejuni cause similar disease symptoms including fever, diarrhea, abdominal cramps, and vomiting lasting anywhere from 2 to 10 days. Most cases of Campylobacter gastroenteritis are self-limited and typically, antibiotic therapy is not needed. When antibiotic therapy is indicated, macrolides and fluoroquinolones are most commonly prescribed. Major food sources linked to C. jejuni infections include improperly handled or undercooked poultry products, raw milk and cheeses made from raw milk, and contaminated water.

Escherichia coli
Escherichia coli Escherichia coli is one of the predominant enteric species in the normal intestinal flora of vertebrates. However, some serotypes of E. coli can cause severe diarrheal diseases in humans. One of these pathogenic strains is E. coli O157, which is monitored for antibiotic resistance by CDC in the human population. More information can be found on the CDC website. USDA and FDA monitor resistance among generic (non-serotyped) E. coli from food animals and retail meats. Generic E. coli are used by NARMS as an indicator organism to detect both emerging resistance patterns and specific resistance genes that could potentially be transferred to other pathogenic gram-negative bacteria, like Salmonella.

Enterococcus
Enterococcus is ubiquitous in nature and can be found in the gastrointestinal tracts, genitourinary tracts, oral cavities, and skin of humans and animals, as well as in insects, plants, soil, and water. Enterococcus is the only gram-positive organism that NARMS routinely monitors. Because it is consistently present in both types of meat and food animals, NARMS uses Enterococcus as an indicator organism to track resistance to antibiotics with activity against gram-positive organisms that may result from antimicrobial use. Enterococcus infection is notable largely as a hospital or community-acquired illness, and not much information is known about its role as a direct cause of foodborne illness. However, it is known that poorly processed meat and milk are among the foods that can transmit it.

About this Dataset

Data Info

Date Created

1996

Last Modified

2022-05-23

Version

2022-05-23

Update Frequency

Annual

Temporal Coverage

1996 - 2022

Spatial Coverage

United States

Source

John Snow Labs; Centers of Disease Control and Prevention(CDC), U.S. Food and Drug Administration (FDA), U.S. Department of Agriculture (USDA);

Source License URL

Source License Requirements

N/A

Source Citation

N/A

Keywords

Human PBMC, Ficoll Separation, Centrifuged Blood, Peripheral Mononuclear, Human Antibiotics, Antibacterial Resistance, Antimicrobial Medicines, Anti Microbial Drugs, Human Isolates, Antimicrobial Resistance

Other Titles

Human PBMC Isolate Data, Human Isolate Data Ficoll Separation, Human Isolate Data Centrifuged Blood, Peripheral Mononuclear Human Isolate Data

Data Fields

Name Description Type Constraints
Specimen_IDUnique identification number of the specimen.string-
NCBI_Accession_NumberAccession number for whole-genome sequence uploaded to NCBI for this isolate (assigned by NCBI).string-
Whole_Genome_Sequence_IDUnique ID assigned by PulseNet for an assembled whole-genome sequence. Used to identify sequences uploaded to NCBI.string-
Is_AST_ApprovedIf yes (true), the isolate was collected for routine surveillance purposes and underwent antimicrobial susceptibly testing (AST) at CDC and AST results are approved by CDC NARMS. If no (false), the isolate was not collected for routine surveillance purposes, or did not undergo antimicrobial susceptibly testing (AST) at CDC, or AST results are not approved by CDC NARMS.boolean-
Is_WGS_ApprovedIf yes (true), the isolate underwent whole genome sequencing (WGS), the WGS data was screened for resistance genes, and results are approved by CDC NARMS. If no (false), the isolate did not undergo whole genome sequencing (WGS), or WGS data was not screened for resistance genes, or the results are not approved by CDC NARMS.boolean-
Genus_of_Bacterial_IsolateValue: Salmonella, Campylobacter, Shigella, Escherichia, Vibriostring-
Species_of_Bacterial_IsolateSpecies of the bacterial isolate. This is usually based on what the submitting laboratory reported, but may be updated if identification is performed at CDC and a different species result is obtained. Species is confirmed at CDC for all Campylobacter submitted for NARMS surveillance.string-
Serotype_of_Bacterial_IsolateSerotype of the bacterial isolate. This is usually based on what the submitting laboratory reported, but may be updated if identification is performed at CDC and a different serotype result is obtained.string-
Data_Year_of_the_Bacterial_Isolate_SubmissionThe calendar year for the isolate (i.e. calendar year is assigned based off of specimen collection date).string-
Region_NameHHS (Health & Human Services) Region is the geographic location for the state that submitted the isolate to NARMS.string-
Age_GroupAge category (in years: 0-4, 5-9, 10-19, 20-29, 30- 39, 40- 49, 50- 59, 60- 69, 70- 79, 80+)string-
Specimen_SourceType of specimen from which the isolate was obtained (i.e. blood or stool)string-
Resistance_PatternAntibiotics that were found to be resistant for the isolate; otherwise, will read "No resistance detected"string-
Resistance_DeterminantsGenes or mutations known to predict resistance found through whole genome sequencing. If none were found, will read "No determinants detected". If whole genome sequencing was not performed on the isolate, will read "Not sequenced". If whole genome sequencing was performed on the isolate, but it has not yet been analyzed for the presence of resistance genes, will read "Not analyzed".string-
Predictive_Resistance_PatternPredicted resistance pattern based on resistance determinants. If no determinants were found, will read "No determinants detected". If whole genome sequencing was not performed on the isolate, will read "Not sequenced". If whole genome sequencing was performed on the isolate, but it has not yet been analyzed for the presence of resistance genes, will read "Not analyzed".string-
Is_Lost_Resistance_On_RetestIf yes (true), the isolate has lost resistance through some mechanism.boolean-
Amikacin_Equivalence_OperatorEquivalence operator on the test result for Amikacinstring-
Amikacin_Resultnumberlevel : Ratio
Amikacin_ConclusionValue: S,I,R,Xstring-
Amikacin_Conclusion_PredictedAMI predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ampicillin_Equivalence_OperatorAMP (or A in Resistance Pattern). Equivalence operator on the test result for Ampicillinstring-
Ampicillin_Resultnumberlevel : Ratio
Ampicillin_ConclusionValue: S,I,R,Xstring-
Ampicillin_Conclusion_PredictedAMP predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Aztreonam_Equivalence_OperatorEquivalence operator on the test result for Aztreonamstring-
Aztreonam_Resultnumberlevel : Ratio
Aztreonam_ConclusionValue: S,I,R,Xstring-
Aztreonam_Conclusion_PredictedATM predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Amoxicillin_Clavulanic_Acid_Equivalence_OperatorAUG (or Au in Resistance Pattern). Equivalence operator on the test result for Amoxicillin-clavulanic acidstring-
Amoxicillin_Clavulanic_Acid_Resultnumberlevel : Ratio
Amoxicillin_Clavulanic_Acid_ConclusionValue: S,I,R,Xstring-
Amoxicillin_Clavulanic_Acid_Conclusion_PredictedAUG predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ceftriaxone_Equivalence_OperatorAXO (or Cx in Resistance Pattern). Equivalence operator on the test result for Ceftriaxonestring-
Ceftriaxone_Resultnumberlevel : Ratio
Ceftriaxone_ConclusionValue: S,I,R,Xstring-
Ceftriaxone_Conclusion_PredictedAXO predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Azithromycin_Equivalence_OperatorEquivalence operator on the test result for Azithromycinstring-
Azithromycin_Resultnumberlevel : Ratio
Azithromycin_ConclusionValue: S,I,R,Xstring-
Azithromycin_Conclusion_PredictedAZM predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ceftazidime_Equivalence_OperatorEquivalence operator on the test result for Ceftazidimestring-
Ceftazidime_Resultnumberlevel : Ratio
Ceftazidime_ConclusionValue: S,I,R,Xstring-
Ceftazidime_Conclusion_PredictedCAZ predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ceftazidime_Clavulanic_Acid_Equivalence_OperatorEquivalence operator on the test result for Ceftazidime-clavulanic acidstring-
Ceftazidime_Clavulanic_Acid_Resultnumberlevel : Ratio
Ceftazidime_Clavulanic_Acid_ConclusionValue: S,I,R,Xstring-
Ceftazidime_Clavulanic_Acid_Conclusion_PredictedCCV predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cephalothin_Equivalence_OperatorEquivalence operator on the test result for Cephalothinstring-
Cephalothin_Resultnumberlevel : Ratio
Cephalothin_ConclusionValue: S,I,R,Xstring-
Cephalothin_Conclusion_PredictedCEP predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cefquinome_Equivalence_OperatorEquivalence operator on the test result for Cefquinomestring-
Cefquinome_Resultnumberlevel : Ratio
Cefquinome_ConclusionValue: S,I,R,Xstring-
Cefquinome_Conclusion_PredictedCEQ predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Chloramphenicol_Equivalence_OperatorCHL (or C in Resistance Pattern). Equivalence operator on the test result for Chloramphenicolstring-
Chloramphenicol_Resultnumberlevel : Ratio
Chloramphenicol_ConclusionValue: S,I,R,Xstring-
Chloramphenicol_Conclusion_PredictedCHL predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ciprofloxacin_Equivalence_OperatorEquivalence operator on the test result for Ciprofloxacinstring-
Ciprofloxacin_Resultnumberlevel : Ratio
Ciprofloxacin_ConclusionValue: S,I,R,Xstring-
Ciprofloxacin_Conclusion_PredictedCIP predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Clindamycin_Equivalence_OperatorEquivalence operator on the test result for Clindamycinstring-
Clindamycin_Resultnumberlevel : Ratio
Clindamycin_ConclusionValue: S,I,R,Xstring-
Clindamycin_Conclusion_PredictedCLI predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Colistin_Equivalence_OperatorEquivalence operator on the test result for Colistinstring-
Colistin_Resultnumberlevel : Ratio
Colistin_ConclusionValue: S,I,R,Xstring-
Colistin_Conclusion_PredictedCOL predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Trimethoprim_Sulfamethoxazole_Equivalence_OperatorEquivalence operator on the test result for Trimethoprim-sulfamethoxazolestring-
Trimethoprim_Sulfamethoxazole_Resultnumberlevel : Ratio
Trimethoprim_Sulfamethoxazole_ConclusionValue: S,I,R,Xstring-
Trimethoprim_Sulfamethoxazole_Conclusion_PredictedCOT predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cefotaxime_Clavulanic_Acid_Equivalence_OperatorEquivalence operator on the test result for Cefotaxime-clavulanic acidstring-
Cefotaxime_Clavulanic_Acid_Resultnumberlevel : Ratio
Cefotaxime_Clavulanic_Acid_ConclusionValue: S,I,R,Xstring-
Cefotaxime_Clavulanic_Acid_Conclusion_PredictedCTC predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cefotaxime_Equivalence_OperatorEquivalence operator on the test result for Cefotaximestring-
Cefotaxime_Resultnumberlevel : Ratio
Cefotaxime_ConclusionValue: S,I,R,Xstring-
Cefotaxime_Conclusion_PredictedCTX predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Erythromycin_Equivalence_OperatorEquivalence operator on the test result for Erythromycinstring-
Erythromycin_Resultnumberlevel : Ratio
Erythromycin_ConclusionValue: S,I,R,Xstring-
Erythromycin_Conclusion_PredictedERY predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cefepime_Equivalence_OperatorEquivalence operator on the test result for Cefepimestring-
Cefepime_Resultnumberlevel : Ratio
Cefepime_ConclusionValue: S,I,R,Xstring-
Cefepime_Conclusion_PredictedFEP predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Florfenicol_Equivalence_OperatorEquivalence operator on the test result for Florfenicolstring-
Florfenicol_Resultnumberlevel : Ratio
Florfenicol_ConclusionValue: S,I,R,Xstring-
Florfenico_Conclusion_PredictedFFN predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Sulfisoxazole_Equivalence_OperatorFIS (or Su in Resistance Pattern). Equivalence operator on the test result for Sulfisoxazolestring-
Sulfisoxazole_Resultintegerlevel : Ratio
Sulfisoxazole_ConclusionValue: S,I,R,Xstring-
Sulfisoxazole_Conclusion_PredictedFIS predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Cefoxitin_Equivalence_OperatorEquivalence operator on the test result for Cefoxitinstring-
Cefoxitin_Resultnumberlevel : Ratio
Cefoxitin_ConclusionValue: S,I,R,Xstring-
Cefoxitin_Conclusion_PredictedFOX predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Gentamicin_Equivalence_OperatorEquivalence operator on the test result for Gentamicinstring-
Gentamicin_Resultnumberlevel : Ratio
Gentamicin_ConclusionValue: S,I,R,Xstring-
Gentamicin_Conclusion_PredictedGEN predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Imipenem_Equivalence_OperatorEquivalence operator on the test result for Imipenemstring-
Imipenem_Resultnumberlevel : Ratio
Imipenem_ConclusionValue: S,I,R,Xstring-
Imipenem_Conclusion_PredictedIMI predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Kanamycin_Equivalence_OperatorEquivalence operator on the test result for Kanamycinstring-
Kanamycin_Resultnumberlevel : Ratio
Kanamycin_ConclusionValue: S,I,R,Xstring-
Kanamycin_Conclusion_PredictedKAN predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Meropenem_Equivalence_OperatorEquivalence operator on the test result for Meropenem.string-
Meropenem_Resultnumberlevel : Ratio
Meropenem_ConclusionValue: S,I,R,Xstring-
Meropenem_Conclusion_PredictedMER predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Naladixic_Acid_Equivalence_OperatorEquivalence operator on the test result for Naladixic acidstring-
Naladixic_Acid_Resultnumberlevel : Ratio
Naladixic_Acid_ConclusionValue: S,I,R,Xstring-
Naladixic_Conclusion_PredictedNAL predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Piperacillin_Tazobactam_Equivalence_OperatorEquivalence operator on the test result for Piperacillin-tazobactamstring-
Piperacillin_Tazobactam_Resultnumberlevel : Ratio
Piperacillin_Tazobactam_ConclusionValue: S,I,R,Xstring-
Piperacillin_Tazobactam_Conclusion_PredictedPTZ predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Sulfamethoxazole_Equivalence_OperatorEquivalence operator on the test result for Sulfamethoxazolestring-
Sulfamethoxazole_Resultintegerlevel : Ratio
Sulfamethoxazole_ConclusionValue: S,I,R,Xstring-
Sulfamethoxazole_Conclusion_PredictedSMX predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Streptomycin_Equivalence_OperatorSTR (or S in Resistance Pattern). STR (or S in Resistance Pattern) .Equivalence operator on the test result for Streptomycinstring-
Streptomycin_Resultnumberlevel : Ratio
Streptomycin_ConclusionValue: S,I,R,Xstring-
Streptomycin_Conclusion_PredictedSTR predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Telithromycin_Equivalence_OperatorEquivalence operator on the test result for Telithromycinstring-
Telithromycin_Resultnumberlevel : Ratio
Telithromycin_ConclusionValue: S,I,R,Xstring-
Telithromycin_Conclusion_PredictedTEL predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Tetracycline_Equivalence_OperatorTET (or T in Resistance Pattern) .Equivalence operator on the test result for Tetracyclinestring-
Tetracycline_Resultnumberlevel : Ratio
Tetracycline_ConclusionValue: S,I,R,Xstring-
Tetracycline_Conclusion_PredictedTET predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-
Ceftiofur_Equivalence_OperatorEquivalence operator on the test result for Ceftiofurstring-
Ceftiofur_Resultnumberlevel : Ratio
Ceftiofur_ConclusionValue: S,I,R,Xstring-
Ceftiofur_Conclusion_PredictedTIO predicted conclusion as determined by genetic sequencing (NPR - No Predicted Resistance, DS - Decreased Susceptibility, or R - Resistant. Will be blank if not sequenced or if not yet analyzed for the presences of resistance genes).string-

Data Preview

Specimen IDNCBI Accession NumberWhole Genome Sequence IDIs AST ApprovedIs WGS ApprovedGenus of Bacterial IsolateSpecies of Bacterial IsolateSerotype of Bacterial IsolateData Year of the Bacterial Isolate SubmissionRegion NameAge GroupSpecimen SourceResistance PatternResistance DeterminantsPredictive Resistance PatternIs Lost Resistance On RetestAmikacin Equivalence OperatorAmikacin ResultAmikacin ConclusionAmikacin Conclusion PredictedAmpicillin Equivalence OperatorAmpicillin ResultAmpicillin ConclusionAmpicillin Conclusion PredictedAztreonam Equivalence OperatorAztreonam ResultAztreonam ConclusionAztreonam Conclusion PredictedAmoxicillin Clavulanic Acid Equivalence OperatorAmoxicillin Clavulanic Acid ResultAmoxicillin Clavulanic Acid ConclusionAmoxicillin Clavulanic Acid Conclusion PredictedCeftriaxone Equivalence OperatorCeftriaxone ResultCeftriaxone ConclusionCeftriaxone Conclusion PredictedAzithromycin Equivalence OperatorAzithromycin ResultAzithromycin ConclusionAzithromycin Conclusion PredictedCeftazidime Equivalence OperatorCeftazidime ResultCeftazidime ConclusionCeftazidime Conclusion PredictedCeftazidime Clavulanic Acid Equivalence OperatorCeftazidime Clavulanic Acid ResultCeftazidime Clavulanic Acid ConclusionCeftazidime Clavulanic Acid Conclusion PredictedCephalothin Equivalence OperatorCephalothin ResultCephalothin ConclusionCephalothin Conclusion PredictedCefquinome Equivalence OperatorCefquinome ResultCefquinome ConclusionCefquinome Conclusion PredictedChloramphenicol Equivalence OperatorChloramphenicol ResultChloramphenicol ConclusionChloramphenicol Conclusion PredictedCiprofloxacin Equivalence OperatorCiprofloxacin ResultCiprofloxacin ConclusionCiprofloxacin Conclusion PredictedClindamycin Equivalence OperatorClindamycin ResultClindamycin ConclusionClindamycin Conclusion PredictedColistin Equivalence OperatorColistin ResultColistin ConclusionColistin Conclusion PredictedTrimethoprim Sulfamethoxazole Equivalence OperatorTrimethoprim Sulfamethoxazole ResultTrimethoprim Sulfamethoxazole ConclusionTrimethoprim Sulfamethoxazole Conclusion PredictedCefotaxime Clavulanic Acid Equivalence OperatorCefotaxime Clavulanic Acid ResultCefotaxime Clavulanic Acid ConclusionCefotaxime Clavulanic Acid Conclusion PredictedCefotaxime Equivalence OperatorCefotaxime ResultCefotaxime ConclusionCefotaxime Conclusion PredictedErythromycin Equivalence OperatorErythromycin ResultErythromycin ConclusionErythromycin Conclusion PredictedCefepime Equivalence OperatorCefepime ResultCefepime ConclusionCefepime Conclusion PredictedFlorfenicol Equivalence OperatorFlorfenicol ResultFlorfenicol ConclusionFlorfenico Conclusion PredictedSulfisoxazole Equivalence OperatorSulfisoxazole ResultSulfisoxazole ConclusionSulfisoxazole Conclusion PredictedCefoxitin Equivalence OperatorCefoxitin ResultCefoxitin ConclusionCefoxitin Conclusion PredictedGentamicin Equivalence OperatorGentamicin ResultGentamicin ConclusionGentamicin Conclusion PredictedImipenem Equivalence OperatorImipenem ResultImipenem ConclusionImipenem Conclusion PredictedKanamycin Equivalence OperatorKanamycin ResultKanamycin ConclusionKanamycin Conclusion PredictedMeropenem Equivalence OperatorMeropenem ResultMeropenem ConclusionMeropenem Conclusion PredictedNaladixic Acid Equivalence OperatorNaladixic Acid ResultNaladixic Acid ConclusionNaladixic Conclusion PredictedPiperacillin Tazobactam Equivalence OperatorPiperacillin Tazobactam ResultPiperacillin Tazobactam ConclusionPiperacillin Tazobactam Conclusion PredictedSulfamethoxazole Equivalence OperatorSulfamethoxazole ResultSulfamethoxazole ConclusionSulfamethoxazole Conclusion PredictedStreptomycin Equivalence OperatorStreptomycin ResultStreptomycin ConclusionStreptomycin Conclusion PredictedTelithromycin Equivalence OperatorTelithromycin ResultTelithromycin ConclusionTelithromycin Conclusion PredictedTetracycline Equivalence OperatorTetracycline ResultTetracycline ConclusionTetracycline Conclusion PredictedCeftiofur Equivalence OperatorCeftiofur ResultCeftiofur ConclusionCeftiofur Conclusion Predicted
AM51658TrueFalseShigellasonnei2012Region 220-29StoolASNot sequencedNot sequenced>32.0R=8.0S<=0.25S=4.0S=8.0S<=0.015S=0.5S<=16.0S=4.0S=1.0S<=8.0S=2S>64.0R<=4.0S=0.5S
AM39779TrueFalseSalmonellaentericaTyphi2008Region 610-19BloodACSSuTNalCotNot sequencedNot sequenced=1.0S>32.0R=4.0S<=0.25S>32.0R=0.25I>4.0R>256.0R=4.0S<=0.25S<=8.0S>32R>64.0R>32.0R=0.5S
AM18255TrueFalseSalmonellaentericaIbadan2003Region 680+StoolNo resistance detectedNot sequencedNot sequenced<=0.5S=2.0S<=1.0S<=0.25S<=2.0S=8.0S<=0.015S=0.25S=2.0S<=0.25S<=8.0S=8S=64.0S<=32.0S<=4.0S=0.5S
AM05608TrueFalseSalmonellaentericaTyphimurium1999Region 30-4StoolNo resistance detectedNot sequencedNot sequenced<=4.0S<=2.0S=1.0S<=0.25S=8.0S=8.0S=0.03S<=0.12S<=0.25S<=16.0S<=4S<=128.0S<=32.0S<=4.0S<=0.5S
AM02405TrueFalseSalmonellaentericaTyphimurium1997Region 160-69StoolASSuTKanNot sequencedNot sequenced<=4.0S>64.0R=8.0S<=0.25S=8.0S<=4.0S<=0.015S<=0.12S<=0.25S>64.0R<=4S>512.0R=256.0R>64.0R<=0.5S
AM46480TrueFalseSalmonellaentericaTyphimurium2011Region 730-39StoolNo resistance detectedNot sequencedNot sequenced<=1.0S<=1.0S<=0.25S=4.0S=4.0S<=0.015S<=0.12S=32.0S=2.0S=0.5S<=8.0S=4S<=32.0S<=4.0S=0.5S
2004023TrueFalseCampylobacterjejuni2004Region 210-19StoolTCipNalNot sequencedNot sequenced=0.19S=4.0S>32.0R=0.5S=2.0S=0.38S>256R>256.0R
AM06451TrueFalseSalmonellaentericaTyphimurium1999Region 20-4StoolNo resistance detectedNot sequencedNot sequenced<=4.0S<=2.0S=1.0S<=0.25S=4.0S<=4.0S<=0.015S<=0.12S<=0.25S<=16.0S<=4S<=128.0S<=32.0S<=4.0S<=0.5S
20110328TrueFalseCampylobacterjejuni2011Region 980+StoolNo resistance detectedNot sequencedNot sequenced=0.06S=0.12S=0.25S=0.5S=1.0S=0.5S<=4S=0.5S=0.25S
AM31294TrueFalseSalmonellaentericaSandiego2007Region 440-49StoolNo resistance detectedNot sequencedNot sequenced=1.0S<=1.0S<=1.0S<=0.25S=8.0S<=0.015S<=0.12S=32.0S=2.0S=0.5S<=8.0S=2S<=32.0S<=4.0S=1.0S