Others titles
- RNA Isoform Data Based on RNA Sequence in Human Tissue and Cell Line
- RNA Sequence in Human Tissue and Cell Line
Keywords
- Tissue Microarray
- RNA based levels
- Expression profiles
- RNA Sequencing Data
- Next Generation Sequencing
Sequence Based RNA Levels in Human Tissue and Cell Line
![Sequence Based RNA Levels in Human Tissue and Cell Line](https://www.johnsnowlabs.com/wp-content/uploads/2018/09/normal/Human-Gene-Expression-Database.png)
This dataset covers the RNA (Ribonucleic acid) levels in 56 cell lines and 37 tissues based on RNA-sequence. The data is based on The Human Protein Atlas version 21.0 and Ensembl version 103.38.
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Description
RNA-Seq (RNA sequencing), also called whole transcriptome shotgun sequencing (WTSS), uses next-generation sequencing (NGS) to reveal the presence and quantity of RNA in a biological sample at a given moment in time.
RNA-Seq is used to analyze the continually changing cellular transcriptome. Specifically, RNA-Seq facilitates the ability to look at alternative gene spliced transcripts, post-transcriptional modifications, gene fusion, mutations/SNPs and changes in gene expression. In addition to mRNA transcripts, RNA-Seq can look at different populations of RNA to include total RNA, small RNA, such as miRNA, tRNA, and ribosomal profiling. RNA-Seq can also be used to determine exon/intron boundaries and verify or amend previously annotated 5′ and 3′ gene boundaries.
About this Dataset
Data Info
Date Created | 2003 |
---|---|
Last Modified | 2021-11-17 |
Version | 21.0 |
Update Frequency |
Annual |
Temporal Coverage |
N/A |
Spatial Coverage |
United States |
Source | John Snow Labs; The Human Protein Atlas, Ensembl; |
Source License URL | |
Source License Requirements |
Publicly available and free for research application but citation is required. Permission asked for commercial uses |
Source Citation |
Publicly available and free for research application but citation is required. Permission asked for commercial uses |
Keywords | Tissue Microarray, RNA based levels, Expression profiles, RNA Sequencing Data, Next Generation Sequencing |
Other Titles | RNA Isoform Data Based on RNA Sequence in Human Tissue and Cell Line, RNA Sequence in Human Tissue and Cell Line |
Data Fields
Name | Description | Type | Constraints |
---|---|---|---|
Sample_Name | Name of the sample | string | required : 1 |
Ensembl_Gene_ID | Gene ID by Ensembl | string | required : 1 |
Gene_ID | Name assigned to gene. | string | required : 1 |
Analyzed_Sample | Type of sample analyzed for RNA levels | string | required : 1 |
Value_of_RNA_Levels | Value of RNA levels in the analyzed sample | number | level : Ratio |
Unit_of_RNA_Levels | string | required : 1 |
Data Preview
Sample Name | Ensembl Gene ID | Gene ID | Analyzed Sample | Value of RNA Levels | Unit of RNA Levels |
Tissue | ENSG00000000003 | TSPAN6 | adipose tissue | 29.8 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | adrenal gland | 18.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | amygdala | 8.2 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | appendix | 4.9 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | basal ganglia | 7.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | bone marrow | 0.6 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | breast | 34.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cerebellum | 7.7 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cerebral cortex | 9.0 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cervix | 26.2 | Transcript Per Million |