Others titles
- RNA Isoform Data Based on RNA Sequence in Human Tissue and Cell Line
- RNA Sequence in Human Tissue and Cell Line
Keywords
- Tissue Microarray
- RNA based levels
- Expression profiles
- RNA Sequencing Data
- Next Generation Sequencing
Sequence Based RNA Levels in Human Tissue and Cell Line
This dataset covers the RNA (Ribonucleic acid) levels in 56 cell lines and 37 tissues based on RNA-sequence. The data is based on The Human Protein Atlas version 21.0 and Ensembl version 103.38.
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Description
RNA-Seq (RNA sequencing), also called whole transcriptome shotgun sequencing (WTSS), uses next-generation sequencing (NGS) to reveal the presence and quantity of RNA in a biological sample at a given moment in time.
RNA-Seq is used to analyze the continually changing cellular transcriptome. Specifically, RNA-Seq facilitates the ability to look at alternative gene spliced transcripts, post-transcriptional modifications, gene fusion, mutations/SNPs and changes in gene expression. In addition to mRNA transcripts, RNA-Seq can look at different populations of RNA to include total RNA, small RNA, such as miRNA, tRNA, and ribosomal profiling. RNA-Seq can also be used to determine exon/intron boundaries and verify or amend previously annotated 5′ and 3′ gene boundaries.
About this Dataset
Data Info
Date Created | 2003 |
---|---|
Last Modified | 2021-11-17 |
Version | 21.0 |
Update Frequency |
Annual |
Temporal Coverage |
N/A |
Spatial Coverage |
United States |
Source | John Snow Labs; The Human Protein Atlas, Ensembl; |
Source License URL | |
Source License Requirements |
Publicly available and free for research application but citation is required. Permission asked for commercial uses |
Source Citation |
Publicly available and free for research application but citation is required. Permission asked for commercial uses |
Keywords | Tissue Microarray, RNA based levels, Expression profiles, RNA Sequencing Data, Next Generation Sequencing |
Other Titles | RNA Isoform Data Based on RNA Sequence in Human Tissue and Cell Line, RNA Sequence in Human Tissue and Cell Line |
Data Fields
Name | Description | Type | Constraints |
---|---|---|---|
Sample_Name | Name of the sample | string | required : 1 |
Ensembl_Gene_ID | Gene ID by Ensembl | string | required : 1 |
Gene_ID | Name assigned to gene. | string | required : 1 |
Analyzed_Sample | Type of sample analyzed for RNA levels | string | required : 1 |
Value_of_RNA_Levels | Value of RNA levels in the analyzed sample | number | level : Ratio |
Unit_of_RNA_Levels | string | required : 1 |
Data Preview
Sample Name | Ensembl Gene ID | Gene ID | Analyzed Sample | Value of RNA Levels | Unit of RNA Levels |
Tissue | ENSG00000000003 | TSPAN6 | adipose tissue | 29.8 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | adrenal gland | 18.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | amygdala | 8.2 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | appendix | 4.9 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | basal ganglia | 7.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | bone marrow | 0.6 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | breast | 34.4 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cerebellum | 7.7 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cerebral cortex | 9.0 | Transcript Per Million |
Tissue | ENSG00000000003 | TSPAN6 | cervix | 26.2 | Transcript Per Million |