Sequence Based RNA Levels in Human Tissue and Cell Line

$199 / year

This dataset covers the RNA (Ribonucleic acid) levels in 56 cell lines and 37 tissues based on RNA-sequence. The data is based on The Human Protein Atlas version 16 and Ensembl version 83.38.

Complexity

RNA-Seq (RNA sequencing), also called whole transcriptome shotgun sequencing (WTSS), uses next-generation sequencing (NGS) to reveal the presence and quantity of RNA in a biological sample at a given moment in time.

RNA-Seq is used to analyze the continually changing cellular transcriptome. Specifically, RNA-Seq facilitates the ability to look at alternative gene spliced transcripts, post-transcriptional modifications, gene fusion, mutations/SNPs and changes in gene expression. In addition to mRNA transcripts, RNA-Seq can look at different populations of RNA to include total RNA, small RNA, such as miRNA, tRNA, and ribosomal profiling. RNA-Seq can also be used to determine exon/intron boundaries and verify or amend previously annotated 5′ and 3′ gene boundaries.

Date Created

2003

Last Modified

2016-12-04

Version

16

Update Frequency

Annual

Temporal Coverage

N/A

Spatial Coverage

United States

Source

John Snow Labs => The Human Protein Atlas, Ensembl

Source License URL

John Snow Labs Standard License

Source License Requirements

Publicly available and free for research application but citation is required. Permission asked for commercial uses

Source Citation

Human Protein Atlas available from www.proteinatlas.org

Keywords

Tissue Microarray, RNA based levels, Expression profiles, RNA Sequencing Data, Next Generation Sequencing

Other Titles

RNA Isoform Data Based on RNA Sequence in Human Tissue and Cell Line, RNA Sequence in Human Tissue and Cell Line

Name Description Type Constraints
Sample_NameName of the samplestringrequired : 1
Ensembl_Gene_IDGene ID by Ensemblstringrequired : 1
Gene_IDName assigned to gene.stringrequired : 1
Analyzed_SampleType of sample analyzed for RNA levelsstringrequired : 1
Value_of_RNA_LevelsValue of RNA levels in the analyzed samplenumberlevel : Ratio
Unit_of_RNA_Levelsstringrequired : 1
Sample_NameEnsembl_Gene_IDGene_IDAnalyzed_SampleValue_of_RNA_LevelsUnit_of_RNA_Levels
TissueENSG00000164458TlungTPM
TissueENSG00000164458TskinTPM
TissueENSG00000039537C6skinTPM
TissueENSG00000057593F7lungTPM
TissueENSG00000090402SIlungTPM
TissueENSG00000090402SIskinTPM
TissueENSG00000101981F9lungTPM
TissueENSG00000101981F9skinTPM
TissueENSG00000113600C9lungTPM
TissueENSG00000145321GClungTPM